I installed Sierra using the EFI and Install_OSX from USB, it reach the setup 1/200 tries. When setup appeared, all the USBs are working, but the first system season it stopped working. In this first install I manage to put the USB ports to work by injecting USBInjectAll.kext and EHC1>EH01 & EHC2>EH02. But is work intermittently. Some boots I got USB and some not. Then without any changes, the USBs stopped working. I tried 30 times.
Then I put the Install_OSX on HD booting with USB Clover, and it reach setup always, but without USB ports. I installed this way (from HD installer) and when the system was ready to use i made the same procedure as before - Inject in USBInjectAll.kext and change EHXX. I booted 30 times and it doesn't work, with or without FixUSB.
The Problems reporting files are attached.