Hi there,
i can confirm that i do not have any USB issues after setting the system up with clover.
No USB problems means for me that "after wake" my ETV tuner comes up automaticly and i can insert any USB pen to USB 2 or USB 3 port with no crashes.
I followed the thread mentioned above. It took me a good week of work of creating a good DSDT and get the clover config right.
I am on Bios F14 and the USB work only if CSM is disabled.
The down side, for any reason i have to figured out yet, the system boots up with out showing the BIOS screen and the clover boot screen.
Also i am not able to boot my second SSD with windows using clover.
That is something i have to work on.
I don't know why the board is so difficult with yosemite.