@tecnicasopr @Feartech, Thanks so much for helping me out to get this far!!
Still having issues with this set up! I migrated all my info from my back up and that's all good, I almost have my computer back to normal.
However, on the auto boot from clover it boots to the end of the line then hangs, I've tried getting rid of the extra boot options (in the shell) that keep appearing apart from the ssd boot and making that boot priority in the bios, once I do that the timer from the boot loader goes and I manually select that to boot and it works fine, Also the shutdown doesn't completely shut it down and the reset doesn't work doesn't, once I turn back on the boot timer kicks in but if I leave it to boot it goes back to boot and hang, once I shut down and get back to the bios, there are more boot options again and I have to delete them there and in the shell again before I can boot up (using bcfg boot rm xx) again this cycle continues. i'm so close to getting this back to where it was before i messed it up trying an update (although now High sierra is working fine once i get it to boot - not tested my firewire etc and no thunderbolt support (would like to eventually get that working) BUT - just don't want to have to do this every time i come to work.
Any help to get me over the finish line would be so greatly appreciated!!