Your USB configuration is wrong.
HS05 looks to be attached to an internal device, therefore should be UsbConnector=255 (not 3).
Same for HS06.
You have two SSxx ports, marked UsbConnector=3. There should therefore be exactly two HSxx ports that correspond with UsbConnector=3. But not including those already identified that should be UsbConnector=255, you have a HS10, HS04, HS03, HS01, which is a total of 4. I expect that there are the same number of HSxx ports with UsbConnector=3 as there are SSxx ports with UsbConnector=3. No more. No less.
ACPI is not patched correctly. For example, your DSDT has no accommodation for _OSI("Darwin"). Must use an "OS Check Fix" patch or _OSI->XOSI+SSDT-XOSI.aml.
And you should remove SSDT-HDEF-HDAS-3.aml. It is wrong and not needed.
Brightness control is not implemented correctly. See guide:
https://www.tonymacx86.com/threads/...rol-using-applebacklightinjector-kext.218222/
(note also that the PNLF patch you added to DSDT.aml is wrong, and clearly not recommended in the guide)
MacBookPro11,2 is a poor choice. Should be MacBookPro11,1 or even MacBookPro13,1.
If AptioMemoryFix.efi works for your computer, you should use it instead of EmuVarableUefi-64.efi + OsxAptioFix*.efi.
If you can disable the serial port (see in ioreg) you should do so (check for BIOS option).
You should try without config.plist/Devices/USB/FixOwnership (or set to false), just to see if it makes a difference.
Also, check BIOS for options related to "fast boot" or something similar, and be sure to disable it.
Patching DSDT with "IRQ Fix" may help, or you can implement the equivalent options in config.plist/ACPI/DSDT/Fixes.