Your ACPI patching is really wrong. With patched OEM SSDTs in ACPI/patched, you must set the SSDT load order with SortedOrder.
Look at the crazy order you are loading your SSDTs:
2:821 0:000 Inserting SSDT-USB.aml from EFI\CLOVER\ACPI\patched ... Success
2:822 0:001 Inserting SSDT-12.aml from EFI\CLOVER\ACPI\patched ... Success
2:822 0:000 Inserting SSDT-PNLF.aml from EFI\CLOVER\ACPI\patched ... Success
2:822 0:000 Inserting SSDT-11.aml from EFI\CLOVER\ACPI\patched ... Success
2:822 0:000 Inserting SSDT-PluginType1.aml from EFI\CLOVER\ACPI\patched ... Success
2:823 0:000 Inserting SSDT-NVMe-RP09.aml from EFI\CLOVER\ACPI\patched ... Success
2:823 0:000 Inserting SSDT-9.aml from EFI\CLOVER\ACPI\patched ... Success
2:823 0:000 Inserting SSDT-8.aml from EFI\CLOVER\ACPI\patched ... Success
2:823 0:000 Inserting SSDT-7.aml from EFI\CLOVER\ACPI\patched ... Success
2:823 0:000 Inserting SSDT-4.aml from EFI\CLOVER\ACPI\patched ... Success
2:823 0:000 Inserting SSDT-DEEPIDLE.aml from EFI\CLOVER\ACPI\patched ... Success
2:824 0:000 Inserting SSDT-6.aml from EFI\CLOVER\ACPI\patched ... Success
2:824 0:000 Inserting SSDT-5.aml from EFI\CLOVER\ACPI\patched ... Success
2:824 0:000 Inserting SSDT-1.aml from EFI\CLOVER\ACPI\patched ... Success
2:824 0:000 Inserting SSDT-XSEL.aml from EFI\CLOVER\ACPI\patched ... Success
2:825 0:000 Inserting SSDT-3.aml from EFI\CLOVER\ACPI\patched ... Success
2:825 0:000 Inserting SSDT-2.aml from EFI\CLOVER\ACPI\patched ... Success
2:825 0:000 Inserting SSDT-0.aml from EFI\CLOVER\ACPI\patched ... Success
2:825 0:000 Inserting SSDT-ESEL.aml from EFI\CLOVER\ACPI\patched ... Success
2:825 0:000 Inserting SSDT-ALC235.aml from EFI\CLOVER\ACPI\patched ... Success
Quite a mess, eh? (you expect that to work???)
Other things to try:
- non-HWP SMBIOS such as MacBookPro11,1 (and really MacBookPro13,2 was not a good idea anyway... more appropriate would be MacBookPro13,1)
- without LPC patch (so no AppleLPC)
- without Shiki
- 10.12.5 (instead of beta)
- update HackrNVMeFamily to 10.12.5
- without AppleALC (use patched AppleHDA injector instead)
- without patched X86PlatformPlugin
- fresh install
- static ACPI patch... you have a strange mixed up mess with static and hotpatch (must easier to see what you're doing with static patch... hotpatch should be implemented only if you know what you're doing and have already verified correct/working static patch)
- without CsmVideoDxe