Check your versions of lilu , applealc kexts,
the latest (v1.2.7, v1.3.2) worked for me on a clean install using KextBeast into Library/Extensions.
I think location might be important, in part because I think Clover Config puts them in /EFI/Clover/Kext/Other on the EFI partition and the recommendation? is they go in /L/E.
Check you dont have them in both locations
not sure if duplicity effects function but it will make it easier to troubleshoot.
Make a note of your sip settings,
I think the kexts will need permissions to run but don't know what they should be - I think mine are as loose as they can be but such a low level of security may (probably) not be necessary. ie My Clover
RT Variables--BooterConfig = 0x28, and CSRActiveConfig = 0x67
Otherwise the old faves of rebuilding the caches and rebooting a few times - the mac equivalent of wd40.