I have exactly the same issue. The USB Drive is rebooting my machine, as well as my USB Drive is unable to boot Chimera itself.
On my internal drive i have added code to direct chimera not to detect additional drives.
I have added
Code:
<key>Scan Single Drive</key>
<string>Yes</string>
to the Boot.plist in /Extra/org.chameleon.Boot.plist so it skips looking for additional drives. This works for me as Chimera will only look local and boot local but Mac OS X will add the USB Drive anyway!
Hope this works for you guys as well as it did for me!
Best of Luck.