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I'm following the update script for APFS described in the desktop guides here. I haven't found any other threads discussing the problem I'm seeing. The problem I have is that on the first reboot after starting up the updater app (booting from "Boot macOS Install" partition for the first time)...

I'm trying to boot my Sierra box into Safe Mode (a suggestion to try to fix a problem caused at the latest update to 10.12.6). Unfortunately, the boot process is hanging at "PCI Configuration Begin" (I'm booting "-x -v" so I can see boot progress). I've done some searching and found a little...