Thanks again for your prompt response to my post, ammulder. Very helpful.
Yeah, think I screwed things up royally when I changed permissions for the SSD containing my OS via the "Get Info" dialogue box. Wanted to be able to access various Mac files whenever I booted into Ubuntu. Anyhoo, long story short, rendered my Mac unbootable in Clover, and after several days of scouring the forums here, I essentially re-installed El Capitan over my existing installation, using your guide. The OS was back up and running, but not without several issues (no regular USB, no sound, etc.). Tried running Disk Utility from the USB installer to repair permissions, but apparently, that did nothing. And now, after reading your post, am guessing that even my El Capitan re-install didn't restore ownership/permissions on the volume. Bummer.
Have used various sudo commands at a rudimentary level in Ubuntu, but usually when following detailed guides. So, am guessing that trying to "repair" the ownership problem might be beyond my capability at this point. What do you recommend? Should I back-up the SSD via Time Machine and reformat it, installing El Capitan completely from scratch? Will this restore original ownership settings? Furthermore, if reformat the SSD and do a fresh install, would I be able to restore all of my settings with Migration Assistant, or will doing this only return the newly installed OS to the same faulty ownership/permission settings as before?
Not worried about losing any sensitive data, as I essentially keep all of my data files on a separate HDD and sym-link them to the home folder on my SSD. If memory serves, though, I think I may also have changed permissions on my data HDD, which means that I'll probably have to back up that volume and reformat that drive as well?
I think the whole problem here started with my wanting to maintain a fully inter-changeable EL CAPITAN/UBUNTU dual-boot, with each OS being on a separate SSD and each OS's respective Home folder occupying a separate HDD. Problem was that Ubuntu would only let me access my Mac files stored in the Public folder. Should have just been content with this, rather than attempting something so stupid as to change the Mac's ownership so that I could access ALL of the files. Everything seemed to go haywire when I clicked the "apply changes to all enclosed files" box. Got another dialogue box warning me that I wouldn't be able to undo this action, and of course, being a complete moron, I clicked yes when it asked me if I wanted to continue.
Have learned the hard way that ext4 and hfs+ don't always play nice, and that I should have been content to shuttle important files between the two OSes via Public folders.
Thanks again for your help. And for what it's worth, your H87N-wifi guide is awesome. Now I know that the problem is with something I did.