Unless I was misled, there was an Apple limitation of 15 USB ports in Mac OS X 10.11+ which led me to follow RehabMan's instructions for generating an SSDT to be placed in EFI/CLOVER/ACPI/Patched. According to IORegistryExplorer.app, identification and selection of USB ports per RehabMan's instructions did in fact allow me to create a SSDT which properly sets up my USB ports and stays within the 15-port limit.
The Increase Port Limit patch was only for finding active USB ports; I deleted it after creating my SSDT. But you (MacMan) are writing that the SSDT was not needed and can be deleted. I'll give that a shot, but I am skeptical.