Begin to investigate the problem. Removed the HD5770 and switched on Intel Graphics HD4600. The problem remains. In system.log I see following:
Jun 23 19:32:02 Romans-Mac-Pro kernel[0]: Wake reason: PXSX PEG0 PEGP PEG1 PEG2
Jun 23 19:32:07 Romans-Mac-Pro kernel[0]: RTC: PowerByCalendarDate setting ignored
Jun 23 19:32:07 --- last message repeated 1 time ---
Jun 23 19:32:07 Romans-Mac-Pro kernel[0]: Previous Sleep Cause: 5
Jun 23 19:32:07 Romans-Mac-Pro kernel[0]: 0x1face000, 0x00000000 Intel82574L::setLinkStatus - not active
Jun 23 19:32:07 Romans-Mac-Pro kernel[0]: The USB device HubDevice (Port 6 of Hub at 0x15000000) may have caused a wake by issuing a remote wakeup (1)
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