There aren't any guides for setting up two separate drives because it's really easy, compared to the process required to set up two partitions on the same drive.
Basically, install Mac OS X on one drive and Windows on the other. In the BIOS settings of your motherboard, set the Mac OS X drive to highest hard drive priority (this is located under "Advanced BIOS Features" or something like that in the BIOS of Gigabyte motherboards). You'll then be able to choose between Mac OS X and Windows at bootup.
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