ga-z68xp-ud4 (USB are 2 x Etron EJ168 chips)
I have 10.9.4 usb3 working except after sleep mode:
kext ver 1,2,7- 2013 Sept 23 will wake after:
sudo kextunload /System/Library/Extensions/GenericUSBXHCI.kext
sudo kextload /System/Library/Extensions/GenericUSBXHCI.kext
thusly, USB 3 functions after sleep if this unload and load is performed.
According to this thread:
http://www.insanelymac.com/forum/topic/285157-patched-appleusbxhci-from-os-1082/page-2 post #23
1) the various USB3 hardware do not have uniform response to GenericUSBHCI.kext.
2) Apple is using non-conventional interrupt calls (2 of them) that affect these various USB3 hardware in different ways.
3) OS X. in different releases interacts with your USB3 hardware and GenericUSBHCI.kext in different ways.
4) The conclusion is writing a stable GenericUDBHCI.kext for all possible hardware and/or OSX releases is not possible.
I have searched pretty far and wide - noting that there are many different symptoms associated with GenericUSBHCI.kext. In my case, the Etron EJ168 simply require this kext to work properly (save the wake issue). Other have reported hardware that seems to work better with this kext removed.
Please refer to the entire thread above for details and stories of various hardware.