I upgraded my system (with 660) to macOS 10.13.1 yesterday, using nVidia's web driver, and Multibeast 10.1. And I experienced the same problem. I swap the 660 to 1060 today and the problem is gone (everything else identical).
I think I found my problem:
"Patches /System/Library/Extensions/AppleRTC.kext to prevent CMOS resets"
This thing Multibeast did is being migrated to the Mac. So after the time machine migration assistant's migration, restore this and it becomes fine.
I install the OS X mountain Lion 10.8.3 fresh on the Macbook Pro and then use the Migration Assistant to transfer the time machine backup from a Hacktintosh.
Then when the Macbook Pro boot up it repeatedly beep 3 times.
Shut down and boot up again. It gives me the problem reporter at the end of...