The ports in Hackintool look OK
XHC at the top of the controller list is fine too.
PR11 and PR21 are hubs on EH01 and EH02.
SS** ports look good too as your H81 chipset only features 2
Sadly the IORegistryExplorer screengrab doesn't show us anything useful. You need to open the XHC section of the tree (about 3/4 of the way down) and also the EH01 and EH02 sections. But from experience of other set-ups like this I would expect the
other PR** ports Hackintool is showing, to be hanging off those hubs. I don't think you should see more than 6x HS** ports which is the original 4x that Acer provides, plus two others from the SS ports (as they accept USB2 devices as well as USB3). That can depend on which kexts you have installed.